PharmTao Home


Google
Web Pharmtao.com

 

 




Welcome To

The Systems Biology Portal - Databases, Web Sources, and Books




What Is Systems Biology?

Currently most systems biology studies focus on understanding cellular networks, i.e., protein networks involved in cell signaling, and their metabolic pathways.
 

Hot Topics in Systems Biology

?Metabolomics and systems biology
?Microbial systems biology
?From functional genomics to systems biology
?Pathways

 

Systems Biology Databases and Web Sources

 

Category

Databases and Web Resources

Note

Database

comprehensive systems-biology database (CSB.DB)

Bio-statistical analyses on gene expression data

 

Human Protein Reference Database (HPRD)

The function of human proteins in health and disease, proteomic interactions and alterations

 

BioCyc

A collection of Pathway/Genome Databases

 

CSNDB (Cell Signaling Networks Database)

 

 

Database of Quantitative Cellular Signaling (DOQCS)

Models of signaling pathways

Pathway

Kinase Pathway Database

Protein kinases, pathways, protein-protein interaction data

 

(EMP) Enzymes and Metabolic Pathways database

Enzymology and metabolism

 

MetaCyc - Metabolic Encyclopedia

Metabolic pathways and their associated enzymes

 

WIT

Gene functions and metabolic models

 

ExPASy - Biochemical Pathways

 

 

GeNet (Gene Networks Database)

Regulatory genes networks acting at embryogenesis

 

KEGG(Kyoto Encyclopedia of Genes and Genomes)

Interacting molecules or genes

 

TRANSPATH

Pathways in the regulation of transcription factors

Interactions

BIND

Biomolecular Interaction Network Database

 

DIP

Database of Interacting Proteins

 

GRID (General Repository for Interaction Datasets)

Genetic and physical interactions

 

Interact

An Object Oriented Database for Protein-Protein Interactions

 

Protein-Protein Interaction Server

The protein-protein interface

 

Pronet Online

Protein-protein interaction

Protein in cells

Cellware

Deterministic and stochastic events in the cell

 

PSORT

Prediction of protein localization sites in cells

 

Protein annotation diagram oriented analysis  (PANDORA)

Analysis of protein sets by integration of annotation sources

E. coli

EcoCyc Encyclopedia

The genome and the biochemical machinery of E. coli

Yeast

MIPS yeast pathways

 

 

Yeast protein complex database

 

Microbial

UM-BBD

Microbial Biocatalysis/Biodegradatation

 

A Collection of Systems Biology Books

                      

                       



 

 

Copyright ?2005 PharmTao.com. All Rights Reserved.